perl - Split a file in several output -


i trying divide big file different files containing single information each variable inside file.

my input file this:

#chrom  pos     id      ref     alt     qual    filter  info    format  pid008sm  ...info here 1.....  #chrom  pos     id      ref     alt     qual    filter  info    format  cl001-sc  ....info here 2....  #chrom  pos     id      ref     alt     qual    filter  info    format  cl001-sc  ....info here 3....          #chrom  pos     id      ref     alt     qual    filter  info    format  pid008sm  ....info here 4.... 

in case create 2 output file (one pid008sm , cl001-sc) information related each of them.

output cl001-sc:

#chrom  pos     id      ref     alt     qual    filter  info    format  cl001-sc  ....info here 2...  ....info here 3... 

output pid008sm

#chrom  pos     id      ref     alt     qual    filter  info    format  pid008sm ....info here 1....  ....info here 4.... 

the script have used in perl suggestion more welcome. thank in advance.

code:

#!/usr/bin/perl; use strict; use warnings;  $file1 = $argv[0] ; $file2 = $argv[1];  open (f1, $file1); #opens first .vcf file comparison open (f2, $file2); #2nd comparison  %file;  ## create hash key each line of file2 while (<f2> ) {         #chomp;         $file{$_}=''; }  ## print line , if key   exist in hash ;         foreach $string (<f1>) {          if ( exists $file{$_}) , ($string =~ /(#)(.+?)(#)/s) {                 print $string;         } } 

something perhaps?

use strict; use warnings;  open $fh, '<', 'chrom.txt' or die $!;  %fh;  while (<$fh>) {    if ( /^#chrom/ ) {      $name =  (split)[-1];      if ($fh{$name}) {       select $fh{$name};       next;     }      $file = "$name.txt";     open $fh{$name}, '>', $file or die qq{unable open "$file" output: $!};     print stdout qq{created file "$file"\n};     select $fh{$name};   }    print; } 

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